U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC107727379 homeobox protein prophet of Pit-1-like [ Sinocyclocheilus rhinocerous ]

Gene ID: 107727379, updated on 28-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
LOC107727379
Gene description
homeobox protein prophet of Pit-1-like
See related
Ensembl:ENSSRHG00000018433
Gene type
protein coding
RefSeq status
MODEL
Organism
Sinocyclocheilus rhinocerous
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Cyprininae; Sinocyclocheilus
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC107727379 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
100 current SAMN03320098_v1.1 (GCF_001515625.1) Unplaced Scaffold NW_015662039.1 (512852..515840, complement)

NW_015662039.1Genomic Context describing neighboring genes Neighboring gene tetratricopeptide repeat protein 7A-like Neighboring gene multiple coagulation factor deficiency protein 2-like Neighboring gene suppressor of cytokine signaling 5-like Neighboring gene protein kinase C epsilon type-like

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_015662039.1 Unplaced Scaffold Reference SAMN03320098_v1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in pituitary gland development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
homeobox protein prophet of Pit-1-like

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Sinocyclocheilus rhinocerous Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SAMN03320098_v1.1 Primary Assembly

Genomic

  1. NW_015662039.1 Reference SAMN03320098_v1.1 Primary Assembly

    Range
    512852..515840 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016537229.1 → XP_016392715.1  homeobox protein prophet of Pit-1-like

    UniProtKB/TrEMBL
    A0A673I9V1
    Related
    ENSSRHP00000035886.1, ENSSRHT00000036936.1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases