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LOC107984089 uncharacterized LOC107984089 [ Homo sapiens (human) ]

Gene ID: 107984089, updated on 10-Dec-2024

Summary

Gene symbol
LOC107984089
Gene description
uncharacterized LOC107984089
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

See LOC107984089 in Genome Data Viewer
Location:
15q13.3
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (32784478..32820989)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (30580660..30617745)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene ARHGAP11A-SCG5 readthrough Neighboring gene uncharacterized LOC105370756 Neighboring gene Sharpr-MPRA regulatory region 2498 Neighboring gene secretogranin V Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:33009711-33010211 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:33010928-33011505 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:33010349-33010927 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:33023067-33023606 Neighboring gene GREM1 antisense RNA 1 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr15:33065769-33066968 Neighboring gene gremlin 1, DAN family BMP antagonist Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr15:33073959-33074522 Neighboring gene formin 1 Neighboring gene microtubule-associated proteins 1A/1B light chain 3 beta 2-like Neighboring gene H3K27ac hESC enhancer GRCh37_chr15:33148981-33149879 Neighboring gene small nucleolar RNA U13

Genomic regions, transcripts, and products

Expression

  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

    Range
    32784478..32820989
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_002957769.2 RNA Sequence

  2. XR_002957770.2 RNA Sequence

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_011332701.1 Reference GRCh38.p14 PATCHES

    Range
    4836459..4873382
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007068947.1 RNA Sequence

  2. XR_007068948.1 RNA Sequence

Reference GRCh38.p14 ALT_REF_LOCI_2

Genomic

  1. NT_187660.1 Reference GRCh38.p14 ALT_REF_LOCI_2

    Range
    4998911..5035834
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001756600.3 RNA Sequence

  2. XR_001756601.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060939.1 Alternate T2T-CHM13v2.0

    Range
    30580660..30617745
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007085846.1 RNA Sequence

  2. XR_007085847.1 RNA Sequence