U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC107984309 uncharacterized LOC107984309 [ Homo sapiens (human) ]

Gene ID: 107984309, updated on 10-Dec-2024

Summary

Go to the top of the page Help
Gene symbol
LOC107984309
Gene description
uncharacterized LOC107984309
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC107984309 in Genome Data Viewer
Location:
11p15.4
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (10900141..10931668, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (10985130..11016075, complement)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene H3K27ac hESC enhancer GRCh37_chr11:10879799-10880436 Neighboring gene H3K27ac hESC enhancer GRCh37_chr11:10880437-10881072 Neighboring gene ZBED5 antisense RNA 1 Neighboring gene uncharacterized LOC124902629 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr11:10920769-10921968 Neighboring gene H3K27ac hESC enhancer GRCh37_chr11:10929292-10929928 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr11:10929929-10930563 Neighboring gene Sharpr-MPRA regulatory region 6670 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3155 Neighboring gene uncharacterized LOC105379882 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3156 Neighboring gene ReSE screen-validated silencer GRCh37_chr11:10958208-10958396 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:11058390-11058890 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:11058891-11059391 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr11:11086765-11087366 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:11089215-11089716 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:11089717-11090216 Neighboring gene OCT4 hESC enhancer GRCh37_chr11:11093610-11094115 Neighboring gene OCT4 hESC enhancer GRCh37_chr11:11117645-11118146 Neighboring gene long intergenic non-protein coding RNA 2752 Neighboring gene activating transcription factor 7 interacting protein 2 pseudogene Neighboring gene uncharacterized LOC105376548

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

Phenotypes

Go to the top of the page Help

Review eQTL and phenotype association data in this region using PheGenI

Variation

Go to the top of the page Help

See studies and variants in dbVar

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

    Range
    10900141..10931668 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007062590.1 RNA Sequence

  2. XR_001748124.2 RNA Sequence

  3. XR_007062589.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060935.1 Alternate T2T-CHM13v2.0

    Range
    10985130..11016075 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007082450.1 RNA Sequence

  2. XR_007082449.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases