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LOC107984486 uncharacterized LOC107984486 [ Homo sapiens (human) ]

Gene ID: 107984486, updated on 10-Dec-2024

Summary

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Gene symbol
LOC107984486
Gene description
uncharacterized LOC107984486
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC107984486 in Genome Data Viewer
Location:
12p13.2
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (12575135..12586958, complement)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene dual specificity phosphatase 16 Neighboring gene H3K27ac hESC enhancer GRCh37_chr12:12686984-12687949 Neighboring gene H3K27ac hESC enhancer GRCh37_chr12:12688131-12688632 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4254 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6012 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6013 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4255 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4256 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4257 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4258 Neighboring gene ribosomal protein L19 pseudogene 17 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6014 Neighboring gene NANOG hESC enhancer GRCh37_chr12:12737991-12738492 Neighboring gene ReSE screen-validated silencer GRCh37_chr12:12749546-12749780 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr12:12753351-12754550 Neighboring gene ReSE screen-validated silencer GRCh37_chr12:12761265-12761483 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:12764179-12764930 Neighboring gene ribosomal protein L21 pseudogene 136 Neighboring gene Sharpr-MPRA regulatory region 2795 Neighboring gene cAMP responsive element binding protein like 2 Neighboring gene uncharacterized LOC124902880

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000012.12 Chromosome 12 Reference GRCh38.p14 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    12575135..12586958 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001749010.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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