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LOC107984500 uncharacterized LOC107984500 [ Homo sapiens (human) ]

Gene ID: 107984500, updated on 17-Sep-2024

Summary

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Gene symbol
LOC107984500
Gene description
uncharacterized LOC107984500
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in kidney (RPKM 37.9), esophagus (RPKM 22.2) and 15 other tissues See more
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Genomic context

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See LOC107984500 in Genome Data Viewer
Location:
12p13.31
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (6348181..6355779)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (6357603..6365202)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112268088 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:6455043-6455543 Neighboring gene RNA, 7SL, cytoplasmic 391, pseudogene Neighboring gene sodium channel epithelial 1 subunit alpha Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:6471267-6471950 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:6472443-6473036 Neighboring gene uncharacterized LOC105369626 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:6483136-6483740 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:6485557-6486161 Neighboring gene lymphotoxin beta receptor Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:6492381-6493246 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:6499827-6500639

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    6348181..6355779
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007063191.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    6357603..6365202
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007082778.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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