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LOC107984564 uncharacterized LOC107984564 [ Homo sapiens (human) ]

Gene ID: 107984564, updated on 10-Dec-2024

Summary

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Gene symbol
LOC107984564
Gene description
uncharacterized LOC107984564
See related
Ensembl:ENSG00000304645
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC107984564 in Genome Data Viewer
Location:
13q22.3
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (77327045..77328198)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (76550893..76553634)

Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene MYC binding protein 2 Neighboring gene uncharacterized LOC124903184 Neighboring gene ReSE screen-validated silencer GRCh37_chr13:77865534-77865737 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7840 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7841 Neighboring gene uncharacterized LOC127898562 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5419 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5418 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7842 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7843 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_33339 Neighboring gene Sharpr-MPRA regulatory region 1150 Neighboring gene uncharacterized LOC124903185 Neighboring gene uncharacterized LOC124903186 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7844 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7845

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

    Range
    77327045..77328198
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001749930.2 RNA Sequence

    Related
    ENST00000805112.1

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060937.1 Alternate T2T-CHM13v2.0

    Range
    76550893..76553634
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007083816.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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