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LOC107984619 uncharacterized LOC107984619 [ Homo sapiens (human) ]

Gene ID: 107984619, updated on 10-Dec-2024

Summary

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Gene symbol
LOC107984619
Gene description
uncharacterized LOC107984619
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC107984619 in Genome Data Viewer
Location:
13q14.12
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (44905152..44924980, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (44125215..44145042, complement)

Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:45373665-45374164 Neighboring gene long intergenic non-protein coding RNA 330 Neighboring gene uncharacterized LOC105370187 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7675 Neighboring gene tRNA-Glu (anticodon TTC) 2-1 Neighboring gene nuclear FMR1 interacting protein 1 Neighboring gene Sharpr-MPRA regulatory region 6953 Neighboring gene H3K27ac hESC enhancer GRCh37_chr13:45563144-45563782 Neighboring gene H3K27ac hESC enhancer GRCh37_chr13:45563783-45564419 Neighboring gene GPALPP motifs containing 1 Neighboring gene RNA, 7SL, cytoplasmic 49, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

    Range
    44905152..44924980 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001749860.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060937.1 Alternate T2T-CHM13v2.0

    Range
    44125215..44145042 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007084070.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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