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LOC107984746 uncharacterized LOC107984746 [ Homo sapiens (human) ]

Gene ID: 107984746, updated on 10-Dec-2024

Summary

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Gene symbol
LOC107984746
Gene description
uncharacterized LOC107984746
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in fat (RPKM 9.5), testis (RPKM 8.8) and 25 other tissues See more
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Genomic context

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See LOC107984746 in Genome Data Viewer
Location:
15q13.1
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (28702019..28706823)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (26478731..26486477)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene putative HERC2-like protein 3 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr15:28905686-28906186 Neighboring gene HERC2 pseudogene 9 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:28911197-28911697 Neighboring gene HECT and RLD domain containing E3 ubiquitin protein ligase 2 pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:28947514-28948014 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:28948015-28948515 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:28950433-28951142 Neighboring gene golgin A8 family member M Neighboring gene RNA, 7SL, cytoplasmic 719, pseudogene Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr15:28989516-28990108 Neighboring gene WHAMM pseudogene 2 Neighboring gene zinc finger FYVE-type containing 9 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

    Range
    28702019..28706823
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001751465.2 RNA Sequence

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_011332701.1 Reference GRCh38.p14 PATCHES

    Range
    864021..867491
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007068919.1 RNA Sequence

Reference GRCh38.p14 ALT_REF_LOCI_2

Genomic

  1. NT_187660.1 Reference GRCh38.p14 ALT_REF_LOCI_2

    Range
    977807..981277
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001756881.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060939.1 Alternate T2T-CHM13v2.0

    Range
    26478731..26486477
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007085798.1 RNA Sequence

Nucleotide Protein
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