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LOC107984983 uncharacterized LOC107984983 [ Homo sapiens (human) ]

Gene ID: 107984983, updated on 10-Dec-2024

Summary

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Gene symbol
LOC107984983
Gene description
uncharacterized LOC107984983
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC107984983 in Genome Data Viewer
Location:
17q22
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (52917867..52929644)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (53793100..53804870)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:50486474-50487018 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:50487019-50487562 Neighboring gene long intergenic non-protein coding RNA 1982 Neighboring gene NANOG hESC enhancer GRCh37_chr17:50528526-50529375 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr17:50750682-50751881 Neighboring gene long intergenic non-protein coding RNA 2089 Neighboring gene long intergenic non-protein coding RNA 2876 Neighboring gene H3K27ac hESC enhancer GRCh37_chr17:51123434-51123934 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr17:51138562-51139451 Neighboring gene MT-CO1 pseudogene 40

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

    Range
    52917867..52929644
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001753058.2 RNA Sequence

  2. XR_001753059.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060941.1 Alternate T2T-CHM13v2.0

    Range
    53793100..53804870
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007087689.1 RNA Sequence

  2. XR_007087690.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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