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LOC107985675 uncharacterized LOC107985675 [ Homo sapiens (human) ]

Gene ID: 107985675, updated on 10-Dec-2024

Summary

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Gene symbol
LOC107985675
Gene description
uncharacterized LOC107985675
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC107985675 in Genome Data Viewer
Location:
Xp22.31
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (7927500..8456384)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (7479769..8022972)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124905241 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chrX:7682068-7682794 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chrX:7682795-7683521 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chrX:7889540-7890739 Neighboring gene Sharpr-MPRA regulatory region 9499 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29393 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29394 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29396 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29395 Neighboring gene variable charge X-linked Neighboring gene patatin like phospholipase domain containing 4 Neighboring gene Sharpr-MPRA regulatory region 2843 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chrX:8073020-8073627 Neighboring gene S232-VCX2 recombination region Neighboring gene uncharacterized LOC107985676 Neighboring gene microRNA 651 Neighboring gene variable charge X-linked 2 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chrX:8313181-8314380 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chrX:8462508-8463707 Neighboring gene long intergenic non-protein coding RNA 3113 Neighboring gene variable charge X-linked 3B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

    Range
    7927500..8456384
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001755783.2 RNA Sequence

  2. XR_001755782.2 RNA Sequence

  3. XR_001755784.2 RNA Sequence

  4. XR_007068387.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060947.1 Alternate T2T-CHM13v2.0

    Range
    7479769..8022972
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007091097.1 RNA Sequence

  2. XR_007091099.1 RNA Sequence

  3. XR_007091098.1 RNA Sequence

  4. XR_007091100.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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