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LOC107985836 uncharacterized LOC107985836 [ Homo sapiens (human) ]

Gene ID: 107985836, updated on 10-Dec-2024

Summary

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Gene symbol
LOC107985836
Gene description
uncharacterized LOC107985836
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC107985836 in Genome Data Viewer
Location:
2q37.3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (240211402..240218903, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (240704104..240711358, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12506 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17394 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17395 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:241078745-241079469 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:241079470-241080193 Neighboring gene COP9 signalosome subunit 9 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:241094499-241094998 Neighboring gene otospiralin Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:241107126-241107741 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:241137725-241137897 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:241139753-241140254 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr2:241144761-241145650 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:241164252-241164752 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:241164753-241165253 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:241166101-241166602 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:241166603-241167102 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12507 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:241173123-241173664 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:241174911-241175411 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:241175540-241176144 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:241190663-241191176 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:241191177-241191688 Neighboring gene uncharacterized LOC105373968 Neighboring gene Sharpr-MPRA regulatory region 2002 Neighboring gene VISTA enhancer hs1750 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:241226785-241227284 Neighboring gene uncharacterized LOC124906196

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

NCBI Reference Sequences (RefSeq)

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NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    240211402..240218903 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001739238.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    240704104..240711358 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007072992.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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