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LOC107985882 uncharacterized LOC107985882 [ Homo sapiens (human) ]

Gene ID: 107985882, updated on 10-Dec-2024

Summary

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Gene symbol
LOC107985882
Gene description
uncharacterized LOC107985882
See related
Ensembl:ENSG00000234690
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC107985882 in Genome Data Viewer
Location:
2p21
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (47252373..47265458, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (47257429..47270512, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene EPCAM divergent transcript Neighboring gene uncharacterized LOC105374588 Neighboring gene uncharacterized LOC124907763 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:47465802-47466556 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:47471001-47471501 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:47476213-47476714 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15726 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15727 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11462 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:47501342-47501842 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:47501843-47502343 Neighboring gene MPRA-validated peak3693 silencer Neighboring gene ReSE screen-validated silencer GRCh37_chr2:47519444-47519732 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15728 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15729 Neighboring gene Sharpr-MPRA regulatory regions 1090 and 15339 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15730 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11463 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15731 Neighboring gene Sharpr-MPRA regulatory region 12385 Neighboring gene Sharpr-MPRA regulatory region 1814 Neighboring gene brain cytoplasmic RNA 1 Neighboring gene RN7SK pseudogene 119

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    47252373..47265458 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001739451.1 RNA Sequence

    Related
    ENST00000781955.1

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    47257429..47270512 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007072041.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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