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LOC107986003 uncharacterized LOC107986003 [ Homo sapiens (human) ]

Gene ID: 107986003, updated on 10-Dec-2024

Summary

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Gene symbol
LOC107986003
Gene description
uncharacterized LOC107986003
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in brain (RPKM 4.8), heart (RPKM 4.7) and 25 other tissues See more
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Genomic context

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See LOC107986003 in Genome Data Viewer
Location:
2q37.3
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (238450464..238460863, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:239330367-239331026 Neighboring gene uncharacterized LOC124908002 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:239334149-239334684 Neighboring gene RNA, U6 small nuclear 234, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12497 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12498 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17383 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr2:239347665-239348864 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:239349077-239349578 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:239349579-239350078 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:239358923-239359430 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:239359431-239359936 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:239363467-239363967 Neighboring gene zinc finger protein 256 pseudogene Neighboring gene ankyrin repeat and SOCS box containing 1 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr2:239417633-239418320 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr2:239418321-239419006 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr2:239426272-239427471 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:239431154-239432062 Neighboring gene long intergenic non-protein coding RNA 1107 Neighboring gene uncharacterized LOC124906130 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:239464607-239465108 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:239508477-239508992 Neighboring gene MPRA-validated peak4103 silencer Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:239547211-239547712 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr2:239565991-239566613 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr2:239592463-239593662 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:239605714-239606214 Neighboring gene uncharacterized LOC105373963

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000002.12 Chromosome 2 Reference GRCh38.p14 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    238450464..238460863 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001739969.2 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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