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LOC107986075 uncharacterized LOC107986075 [ Homo sapiens (human) ]

Gene ID: 107986075, updated on 17-Sep-2024

Summary

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Gene symbol
LOC107986075
Gene description
uncharacterized LOC107986075
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC107986075 in Genome Data Viewer
Location:
3p22.1
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (39419212..39424860)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (39432133..39437001)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14228 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:39450309-39451100 Neighboring gene small nucleolar RNA, H/ACA box 62 Neighboring gene small nucleolar RNA, H/ACA box 6 Neighboring gene ribosomal protein SA Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14229 Neighboring gene NANOG hESC enhancer GRCh37_chr3:39508789-39509471 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:39513805-39514612 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr3:39514613-39515420 Neighboring gene myelin associated oligodendrocyte basic protein Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr3:39547383-39547882 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr3:39618867-39619806 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:39624719-39625251 Neighboring gene NFE2L2 motif-containing MPRA enhancer 66 Neighboring gene NFU1 iron-sulfur cluster scaffold pseudogene 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    39419212..39424860
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001740663.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    39432133..39437001
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007073130.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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