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LOC107986312 uncharacterized LOC107986312 [ Homo sapiens (human) ]

Gene ID: 107986312, updated on 17-Sep-2024

Summary

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Gene symbol
LOC107986312
Gene description
uncharacterized LOC107986312
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC107986312 in Genome Data Viewer
Location:
4q28.1
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (127228468..127282261, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (130531462..130585268, complement)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105377411 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:127410578-127411093 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:127411094-127411608 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_73007 Neighboring gene RNA binding motif protein 48 pseudogene 1 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:127692753-127693387 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_73151 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_73157 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_73174 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr4:127771052-127772251 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_73198 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_73219 Neighboring gene MPRA-validated peak5104 silencer Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:127941473-127942018 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_73301 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:127988930-127989494 Neighboring gene uncharacterized LOC102724210 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_73347 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_73368 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_73373 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_73387 Neighboring gene Sharpr-MPRA regulatory region 9584 Neighboring gene ReSE screen-validated silencer GRCh37_chr4:128328664-128328924 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_73515 Neighboring gene Sharpr-MPRA regulatory region 5357 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_73569 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:128525826-128526649 Neighboring gene uncharacterized LOC105377412 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:128553760-128554299 Neighboring gene OCT4-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:128576502-128577102 Neighboring gene OCT4-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:128577103-128577701 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr4:128607842-128609041 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr4:128629462-128630661 Neighboring gene inturned planar cell polarity protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    127228468..127282261 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001741826.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    130531462..130585268 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007074967.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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