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LINC02430 long intergenic non-protein coding RNA 2430 [ Homo sapiens (human) ]

Gene ID: 107986319, updated on 10-Dec-2024

Summary

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Official Symbol
LINC02430provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2430provided by HGNC
Primary source
HGNC:HGNC:53361
See related
Ensembl:ENSG00000250252 AllianceGenome:HGNC:53361
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LINC02430 in Genome Data Viewer
Location:
4q31.23
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (149147793..149154165, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (152469681..152476053, complement)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107986195 Neighboring gene uncharacterized LOC105377480 Neighboring gene RNA, U7 small nuclear 197 pseudogene Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr4:150015556-150016755 Neighboring gene NANOG hESC enhancer GRCh37_chr4:150104754-150105266 Neighboring gene long intergenic non-protein coding RNA 2355 Neighboring gene uncharacterized LOC107986320 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr4:150262096-150263295 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr4:150329764-150330963 Neighboring gene IQ motif containing M Neighboring gene uncharacterized LOC105377479

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    149147793..149154165 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001741884.2 RNA Sequence

    Related
    ENST00000668418.1

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    152469681..152476053 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007075066.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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