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TRIM7-AS1 TRIM7 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 107986496, updated on 17-Sep-2024

Summary

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Official Symbol
TRIM7-AS1provided by HGNC
Official Full Name
TRIM7 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:40764
See related
AllianceGenome:HGNC:40764
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in skin (RPKM 1.7), esophagus (RPKM 0.8) and 7 other tissues See more
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Genomic context

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See TRIM7-AS1 in Genome Data Viewer
Location:
5q35.3
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (181200075..181203117)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (181760111..181763151)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16785 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23782 Neighboring gene long intergenic non-protein coding RNA 1962 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16786 Neighboring gene tRNA-Thr (anticodon TGT) 6-1 Neighboring gene TRIM7 antisense RNA 2 Neighboring gene tripartite motif containing 7 Neighboring gene Sharpr-MPRA regulatory region 12726 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16787 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16788 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16789 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16790 Neighboring gene tRNA-Ala (anticodon TGC) 3-1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23783 Neighboring gene tRNA-Lys (anticodon CTT) 2-2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    181200075..181203117
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001743050.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    181760111..181763151
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007076223.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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