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LOC107986548 uncharacterized LOC107986548 [ Homo sapiens (human) ]

Gene ID: 107986548, updated on 10-Dec-2024

Summary

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Gene symbol
LOC107986548
Gene description
uncharacterized LOC107986548
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC107986548 in Genome Data Viewer
Location:
6q27
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (168099304..168100924)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (169440188..169441808)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105378135 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:168449097-168449596 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:168459591-168460092 Neighboring gene FERM domain containing 1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:168478883-168479604 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:168482533-168483533 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:168483534-168484533 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:168499911-168500412 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:168506640-168507627 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:168518029-168518528 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:168521725-168522286 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:168525719-168526232 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:168529825-168530422 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:168551001-168551637 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:168556329-168557328 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:168557329-168558326 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:168558327-168559325 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr6:168568969-168570168 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:168580313-168581020 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr6:168590405-168591604 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:168594074-168594641 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:168594898-168595547 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:168595548-168596196 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr6:168608743-168609449 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:168609450-168610156 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:168615624-168616124 Neighboring gene uncharacterized LOC105378137 Neighboring gene uncharacterized LOC124901501 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:168631271-168631772

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    168099304..168100924
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001743902.2 RNA Sequence

  2. XR_001743903.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    169440188..169441808
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007077345.1 RNA Sequence

  2. XR_007077346.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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