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LOC107986550 uncharacterized LOC107986550 [ Homo sapiens (human) ]

Gene ID: 107986550, updated on 22-Oct-2024

Summary

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Gene symbol
LOC107986550
Gene description
uncharacterized LOC107986550
See related
Ensembl:ENSG00000289090
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC107986550 in Genome Data Viewer
Location:
6q27
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (168726112..168740439)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (170072214..170086512)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105378142 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:169095714-169096228 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:169101755-169102256 Neighboring gene uncharacterized LOC105378143 Neighboring gene ReSE screen-validated silencer GRCh37_chr6:169116900-169117100 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr6:169156090-169156594 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:169183401-169184285 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:169184286-169185169 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr6:169194256-169195455 Neighboring gene OCT4-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:169239888-169240466 Neighboring gene OCT4-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:169240467-169241046 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:169241047-169241624 Neighboring gene ReSE screen-validated silencer GRCh37_chr6:169241587-169241730 Neighboring gene uncharacterized LOC105378144 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:169267268-169267871 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:169267872-169268474 Neighboring gene uncharacterized LOC105378146 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:169350566-169351070 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr6:169362660-169363859 Neighboring gene uncharacterized LOC105378145

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    168726112..168740439
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001743905.2 RNA Sequence

    Related
    ENST00000693564.2

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    170072214..170086512
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007077358.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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