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LOC107986610 uncharacterized LOC107986610 [ Homo sapiens (human) ]

Gene ID: 107986610, updated on 10-Dec-2024

Summary

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Gene symbol
LOC107986610
Gene description
uncharacterized LOC107986610
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC107986610 in Genome Data Viewer
Location:
6q12
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (67924462..67928707, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (69088916..69093161, complement)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_94210 Neighboring gene RNA, 5S ribosomal pseudogene 208 Neighboring gene RNA, U6 small nuclear 280, pseudogene Neighboring gene MPRA-validated peak5873 silencer Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr6:68531597-68532796 Neighboring gene Sharpr-MPRA regulatory region 5869 Neighboring gene uncharacterized LOC105377845 Neighboring gene histone-lysine N-methyltransferase SUV39H2-like Neighboring gene Sharpr-MPRA regulatory region 13069 Neighboring gene MPRA-validated peak5878 silencer Neighboring gene uncharacterized LOC105377844 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr6:68706731-68707930

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    67924462..67928707 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001744194.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    69088916..69093161 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007076877.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases