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LOC107986671 uncharacterized LOC107986671 [ Homo sapiens (human) ]

Gene ID: 107986671, updated on 17-Sep-2024

Summary

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Gene symbol
LOC107986671
Gene description
uncharacterized LOC107986671
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC107986671 in Genome Data Viewer
Location:
6q27
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (166633632..166648710)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (168011767..168026739)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene ribosomal protein S6 kinase A2 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:166946507-166947008 Neighboring gene microRNA 1913 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25435 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25436 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:166955818-166956418 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:166956766-166957686 Neighboring gene NANOG hESC enhancer GRCh37_chr6:166965189-166965763 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:166978541-166979078 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:166985773-166986662 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:166993250-166993750 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:166993751-166994251 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:166994332-166995152 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17778 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25437 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25438 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:167032008-167032774 Neighboring gene RNA guanine-7 methyltransferase activating subunit like Neighboring gene OCT4-H3K4me1 hESC enhancer GRCh37_chr6:167034435-167034935 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17779 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17780 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17781 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:167068910-167069464 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:167103273-167103941 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr6:167107051-167108250 Neighboring gene insulin like growth factor 2 mRNA binding protein 3 pseudogene Neighboring gene Sharpr-MPRA regulatory region 5298 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr6:167149720-167150919 Neighboring gene ReSE screen-validated silencer GRCh37_chr6:167155940-167156108 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:167179935-167180722 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr6:167184261-167185460 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr6:167196736-167197935 Neighboring gene uncharacterized LOC124901459

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    166633632..166648710
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001744466.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    168011767..168026739
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007077306.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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