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PDK4-AS1 PDK4 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 107986824, updated on 10-Dec-2024

Summary

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Official Symbol
PDK4-AS1provided by HGNC
Official Full Name
PDK4 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:55767
See related
AllianceGenome:HGNC:55767
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in fat (RPKM 5.2), adrenal (RPKM 1.3) and 8 other tissues See more
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Genomic context

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See PDK4-AS1 in Genome Data Viewer
Location:
7q21.3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (95596679..95611117)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (96832836..96847848)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124901699 Neighboring gene Sharpr-MPRA regulatory region 6047 Neighboring gene pyruvate dehydrogenase kinase 4 Neighboring gene VISTA enhancer hs1831 Neighboring gene VISTA enhancer hs2505 Neighboring gene uncharacterized LOC107986746 Neighboring gene uncharacterized LOC105375409

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

    Range
    95596679..95611117
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001745287.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060931.1 Alternate T2T-CHM13v2.0

    Range
    96832836..96847848
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007077728.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases