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LOC107987064 uncharacterized LOC107987064 [ Homo sapiens (human) ]

Gene ID: 107987064, updated on 17-Sep-2024

Summary

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Gene symbol
LOC107987064
Gene description
uncharacterized LOC107987064
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC107987064 in Genome Data Viewer
Location:
9p13.1
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (38201960..38227047, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (38225897..38250997, complement)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene U8 small nucleolar RNA Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28412 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr9:38170544-38171743 Neighboring gene small nucleolar RNA U13 Neighboring gene MPRA-validated peak7237 silencer Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr9:38213884-38214764 Neighboring gene Sharpr-MPRA regulatory region 15195 Neighboring gene MPRA-validated peak7238 silencer Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:38257983-38258545 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:38310912-38311470 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:38316401-38316900 Neighboring gene uncharacterized LOC107987065 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28413 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr9:38325532-38326041 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28414 Neighboring gene uncharacterized LOC105376040 Neighboring gene Sharpr-MPRA regulatory region 3476 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr9:38380800-38381748 Neighboring gene Sharpr-MPRA regulatory region 2586 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19918 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28415 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28416 Neighboring gene aldehyde dehydrogenase 1 family member B1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    38201960..38227047 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001746667.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    38225897..38250997 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007080333.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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