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LOC107987115 uncharacterized LOC107987115 [ Homo sapiens (human) ]

Gene ID: 107987115, updated on 10-Dec-2024

Summary

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Gene symbol
LOC107987115
Gene description
uncharacterized LOC107987115
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC107987115 in Genome Data Viewer
Location:
9q31.3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (110761058..110785691, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (122932721..122957347, complement)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105376218 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_105200 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_105219 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_105225 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_105248 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_105271 Neighboring gene NANOG hESC enhancer GRCh37_chr9:113455510-113456011 Neighboring gene muscle associated receptor tyrosine kinase Neighboring gene NANOG hESC enhancer GRCh37_chr9:113490321-113490840 Neighboring gene Sharpr-MPRA regulatory region 6532 Neighboring gene ribosomal protein S21 pseudogene 5 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr9:113544666-113545865 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:113553096-113553668 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28787 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28788 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_105418 Neighboring gene lysophosphatidic acid receptor 1 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_105435 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_105449 Neighboring gene RNA, U6 small nuclear 432, pseudogene Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_105469 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28789 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28790 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28791 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20175 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:113715081-113715580 Neighboring gene uncharacterized LOC124902248 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20176

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

General gene information

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Homology

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    110761058..110785691 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001746892.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    122932721..122957347 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007079928.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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