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Mtcl3 MTCL family member 3 [ Rattus norvegicus (Norway rat) ]

Gene ID: 108349256, updated on 2-Nov-2024

Summary

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Official Symbol
Mtcl3provided by RGD
Official Full Name
MTCL family member 3provided by RGD
Primary source
RGD:11479453
See related
EnsemblRapid:ENSRNOG00000012324 AllianceGenome:RGD:11479453
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Soga3
Summary
Predicted to be involved in regulation of autophagy. Predicted to be located in extracellular space and membrane. Orthologous to human MTCL3 (MTCL family member 3). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
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Genomic context

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See Mtcl3 in Genome Data Viewer
Location:
1p11
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (30469698..30530205, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (28629036..28701416, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (31066241..31124885, complement)

Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene ADP-ribosylation factor 1, pseudogene 5 Neighboring gene Kiaa0408-like Neighboring gene small nucleolar RNA SNORA17 Neighboring gene liver enriched gene 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RGD

Process Evidence Code Pubs
involved_in regulation of autophagy IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
microtubule cross-linking factor 3
Names
SOGA family member 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086019.1 Reference GRCr8

    Range
    30469698..30530205 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017589873.3 → XP_017445362.1  microtubule cross-linking factor 3 isoform X2

    UniProtKB/TrEMBL
    A0A8I6A680, A6JUT9
    Related
    ENSRNOP00000086640.1, ENSRNOT00000107617.2

  2. XM_063276574.1 → XP_063132644.1  microtubule cross-linking factor 3 isoform X1

    Related
    ENSRNOP00000100807.1, ENSRNOT00000146493.1

  3. XM_063276585.1 → XP_063132655.1  microtubule cross-linking factor 3 isoform X4

  4. XM_039099296.2 → XP_038955224.1  microtubule cross-linking factor 3 isoform X3

    Conserved Domains (1) summary
    COG1579
    Location:355 → 492
    COG1579; Predicted nucleic acid-binding protein, contains Zn-ribbon domain [General function prediction only]
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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