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atxn1.S ataxin 1 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 108720115, updated on 20-Nov-2024

Summary

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Official Symbol
atxn1.S
Official Full Name
ataxin 1 S homeolog
Primary source
Xenbase:XB-GENE-17335803
Locus tag
XELAEV_18033487mg
See related
EnsemblRapid:ENSXLAG00005004335 AllianceGenome:Xenbase:XB-GENE-17335803
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
atx1
Summary
Predicted to enable DNA binding activity and RNA binding activity. Predicted to act upstream of or within negative regulation of transcription by RNA polymerase II and nervous system development. Predicted to be located in nucleus. Human ortholog(s) of this gene implicated in spinocerebellar ataxia type 1. Orthologous to human ATXN1 (ataxin 1). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See atxn1.S in Genome Data Viewer
Location:
chromosome: 6S
Exon count:
13
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 6S NC_054382.1 (79803855..79983371)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 6S NC_030735.1 (71789611..71968361)

Chromosome 6S - NC_054382.1Genomic Context describing neighboring genes Neighboring gene stathmin domain containing 1 S homeolog Neighboring gene uncharacterized LOC121395140 Neighboring gene uncharacterized LOC121395141 Neighboring gene uncharacterized LOC121395142 Neighboring gene uncharacterized LOC121395143

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
ataxin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054382.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    79803855..79983371
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041567756.1 → XP_041423690.1  ataxin-1

    UniProtKB/TrEMBL
    A0A1L8FSD1, A0A974CNS4, A0A974HE15
    Conserved Domains (2) summary
    pfam08517
    Location:546 → 657
    AXH; Ataxin-1 and HBP1 module (AXH)
    pfam12547
    Location:371 → 415
    ATXN-1_C; Capicua transcriptional repressor modulator

  2. XM_041567755.1 → XP_041423689.1  ataxin-1

    UniProtKB/TrEMBL
    A0A1L8FSD1, A0A974CNS4, A0A974HE15
    Conserved Domains (2) summary
    pfam08517
    Location:546 → 657
    AXH; Ataxin-1 and HBP1 module (AXH)
    pfam12547
    Location:371 → 415
    ATXN-1_C; Capicua transcriptional repressor modulator

  3. XM_018269505.2 → XP_018124994.1  ataxin-1

    UniProtKB/TrEMBL
    A0A1L8FSD1, A0A974CNS4, A0A974HE15
    Related
    ENSXLAP00005012964.1, ENSXLAT00005013144.1
    Conserved Domains (2) summary
    pfam08517
    Location:546 → 657
    AXH; Ataxin-1 and HBP1 module (AXH)
    pfam12547
    Location:371 → 415
    ATXN-1_C; Capicua transcriptional repressor modulator

  4. XM_018269508.2 → XP_018124997.1  ataxin-1

    UniProtKB/TrEMBL
    A0A1L8FSD1, A0A974CNS4, A0A974HE15
    Conserved Domains (2) summary
    pfam08517
    Location:546 → 657
    AXH; Ataxin-1 and HBP1 module (AXH)
    pfam12547
    Location:371 → 415
    ATXN-1_C; Capicua transcriptional repressor modulator

  5. XM_018269509.2 → XP_018124998.1  ataxin-1

    UniProtKB/TrEMBL
    A0A1L8FSD1, A0A974CNS4, A0A974HE15
    Conserved Domains (2) summary
    pfam08517
    Location:546 → 657
    AXH; Ataxin-1 and HBP1 module (AXH)
    pfam12547
    Location:371 → 415
    ATXN-1_C; Capicua transcriptional repressor modulator

  6. XM_041567758.1 → XP_041423692.1  ataxin-1

    UniProtKB/TrEMBL
    A0A1L8FSD1, A0A974CNS4, A0A974HE15
    Conserved Domains (2) summary
    pfam08517
    Location:546 → 657
    AXH; Ataxin-1 and HBP1 module (AXH)
    pfam12547
    Location:371 → 415
    ATXN-1_C; Capicua transcriptional repressor modulator

  7. XM_018269507.2 → XP_018124996.1  ataxin-1

    UniProtKB/TrEMBL
    A0A1L8FSD1, A0A974CNS4, A0A974HE15
    Conserved Domains (2) summary
    pfam08517
    Location:546 → 657
    AXH; Ataxin-1 and HBP1 module (AXH)
    pfam12547
    Location:371 → 415
    ATXN-1_C; Capicua transcriptional repressor modulator

  8. XM_018269506.2 → XP_018124995.1  ataxin-1

    UniProtKB/TrEMBL
    A0A1L8FSD1, A0A974CNS4, A0A974HE15
    Conserved Domains (2) summary
    pfam08517
    Location:546 → 657
    AXH; Ataxin-1 and HBP1 module (AXH)
    pfam12547
    Location:371 → 415
    ATXN-1_C; Capicua transcriptional repressor modulator

  9. XM_041567757.1 → XP_041423691.1  ataxin-1

    UniProtKB/TrEMBL
    A0A1L8FSD1, A0A974CNS4, A0A974HE15
    Conserved Domains (2) summary
    pfam08517
    Location:546 → 657
    AXH; Ataxin-1 and HBP1 module (AXH)
    pfam12547
    Location:371 → 415
    ATXN-1_C; Capicua transcriptional repressor modulator

RNA

  1. XR_001936326.2 RNA Sequence

  2. XR_005962272.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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