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scgn.S secretagogin, EF-hand calcium binding protein S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 108720130, updated on 20-Nov-2024

Summary

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Official Symbol
scgn.S
Official Full Name
secretagogin, EF-hand calcium binding protein S homeolog
Primary source
Xenbase:XB-GENE-17343026
Locus tag
XELAEV_18033516mg
See related
EnsemblRapid:ENSXLAG00005016994 AllianceGenome:Xenbase:XB-GENE-17343026
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Summary
Predicted to enable calcium ion binding activity. Predicted to act upstream of or within regulation of long-term synaptic potentiation and regulation of presynaptic cytosolic calcium ion concentration. Predicted to be located in several cellular components, including cytosol; dendrite; and terminal bouton. Orthologous to human SCGN (secretagogin, EF-hand calcium binding protein). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See scgn.S in Genome Data Viewer
Location:
chromosome: 6S
Exon count:
11
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 6S NC_054382.1 (83024581..83055542, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 6S NC_030735.1 (74811141..74842073, complement)

Chromosome 6S - NC_054382.1Genomic Context describing neighboring genes Neighboring gene acyl-CoA thioesterase 13 S homeolog Neighboring gene par-6 family cell polarity regulator gamma S homeolog Neighboring gene capping protein regulator and myosin 1 linker 1 S homeolog Neighboring gene RHO family interacting cell polarization regulator 2 S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
secretagogin-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054382.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    83024581..83055542 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018269525.2 → XP_018125014.1  secretagogin-like

    UniProtKB/TrEMBL
    A0A1L8FSI7, A0A974CK36, A0A974CNI8
    Related
    ENSXLAP00005050050.1, ENSXLAT00005051191.1
Nucleotide Protein Strain
Heading Accession and Version

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