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carmil1.S capping protein regulator and myosin 1 linker 1 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 108720131, updated on 4-Nov-2024

Summary

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Official Symbol
carmil1.S
Official Full Name
capping protein regulator and myosin 1 linker 1 S homeolog
Primary source
Xenbase:XB-GENE-17334927
Locus tag
XELAEV_18033517mg
See related
EnsemblRapid:ENSXLAG00005017006 AllianceGenome:Xenbase:XB-GENE-17334927
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
lrrc16a
Summary
Orthologous to human CARMIL1 (capping protein regulator and myosin 1 linker 1). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See carmil1.S in Genome Data Viewer
Location:
chromosome: 6S
Exon count:
39
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 6S NC_054382.1 (83062032..83219819, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 6S NC_030735.1 (74848605..74924714, complement)

Chromosome 6S - NC_054382.1Genomic Context describing neighboring genes Neighboring gene par-6 family cell polarity regulator gamma S homeolog Neighboring gene secretagogin, EF-hand calcium binding protein S homeolog Neighboring gene RHO family interacting cell polarization regulator 2 S homeolog Neighboring gene geminin, DNA replication inhibitor S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
F-actin-uncapping protein LRRC16A; capping protein regulator and myosin 1 linker 1 S homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054382.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    83062032..83219819 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041567768.1 → XP_041423702.1  F-actin-uncapping protein LRRC16A isoform X6

    UniProtKB/TrEMBL
    A0A8J1L2D4, A0A974CJE6
    Conserved Domains (5) summary
    sd00033
    Location:245 → 272
    LRR_RI; leucine-rich repeat [structural motif]
    sd00034
    Location:129 → 153
    LRR_AMN1; leucine-rich repeat [structural motif]
    pfam16000
    Location:691 → 986
    CARMIL_C; CARMIL C-terminus
    pfam17888
    Location:1 → 25
    Carm_PH; Carmil pleckstrin homology domain
    cl39015
    Location:205 → 530
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...

  2. XM_041567765.1 → XP_041423699.1  F-actin-uncapping protein LRRC16A isoform X3

    UniProtKB/TrEMBL
    A0A8J1L3Z6, A0A974CJE6
    Conserved Domains (3) summary
    sd00033
    Location:339 → 366
    LRR_RI; leucine-rich repeat [structural motif]
    sd00034
    Location:223 → 247
    LRR_AMN1; leucine-rich repeat [structural motif]
    cl39015
    Location:299 → 624
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...

  3. XM_041567764.1 → XP_041423698.1  F-actin-uncapping protein LRRC16A isoform X2

    UniProtKB/TrEMBL
    A0A8J1L2D0, A0A974CJE6
    Conserved Domains (3) summary
    sd00033
    Location:339 → 366
    LRR_RI; leucine-rich repeat [structural motif]
    sd00034
    Location:223 → 247
    LRR_AMN1; leucine-rich repeat [structural motif]
    cl39015
    Location:299 → 624
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...

  4. XM_041567763.1 → XP_041423697.1  F-actin-uncapping protein LRRC16A isoform X1

    UniProtKB/TrEMBL
    A0A8J1L2C9, A0A974CJE6
    Related
    ENSXLAP00005050092.1, ENSXLAT00005051233.1
    Conserved Domains (3) summary
    sd00033
    Location:339 → 366
    LRR_RI; leucine-rich repeat [structural motif]
    sd00034
    Location:223 → 247
    LRR_AMN1; leucine-rich repeat [structural motif]
    cl39015
    Location:299 → 624
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...

  5. XM_041567767.1 → XP_041423701.1  F-actin-uncapping protein LRRC16A isoform X5

    UniProtKB/TrEMBL
    A0A8J1L2C8, A0A974CJE6
    Conserved Domains (3) summary
    sd00033
    Location:339 → 366
    LRR_RI; leucine-rich repeat [structural motif]
    sd00034
    Location:223 → 247
    LRR_AMN1; leucine-rich repeat [structural motif]
    cl39015
    Location:299 → 624
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...

  6. XM_041567766.1 → XP_041423700.1  F-actin-uncapping protein LRRC16A isoform X4

    UniProtKB/TrEMBL
    A0A8J1L541, A0A974CJE6
    Related
    ENSXLAP00005050103.1, ENSXLAT00005051244.1
    Conserved Domains (4) summary
    sd00033
    Location:339 → 366
    LRR_RI; leucine-rich repeat [structural motif]
    sd00034
    Location:223 → 247
    LRR_AMN1; leucine-rich repeat [structural motif]
    pfam04929
    Location:1276 → 1364
    Herpes_DNAp_acc; Herpes DNA replication accessory factor
    cl39015
    Location:299 → 624
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
Nucleotide Protein Strain
Heading Accession and Version

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