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LOC109888648 ADP-ribosylation factor-like protein 2-binding protein [ Oncorhynchus kisutch (coho salmon) ]

Gene ID: 109888648, updated on 14-Dec-2023

Summary

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Gene symbol
LOC109888648
Gene description
ADP-ribosylation factor-like protein 2-binding protein
See related
Ensembl:ENSOKIG00005000741
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus kisutch
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC109888648 in Genome Data Viewer
Location:
chromosome: LG4
Exon count:
7
Annotation release Status Assembly LG Location
101 current Okis_V2 (GCF_002021735.2) LG4 NC_034177.2 (26714002..26715884, complement)
100 previous assembly Okis_V1 (GCF_002021735.1) LG4 NC_034177.1 (22653584..22655443, complement)

Linkage Group LG4 - NC_034177.2Genomic Context describing neighboring genes Neighboring gene protein-glutamine gamma-glutamyltransferase 2 Neighboring gene plasmolipin Neighboring gene RING finger and SPRY domain-containing protein 1 Neighboring gene PSME3-interacting protein-like Neighboring gene copine II

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in maintenance of protein location in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of tyrosine phosphorylation of STAT protein IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrial intermembrane space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ADP-ribosylation factor-like protein 2-binding protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus kisutch Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Okis_V2 Primary Assembly

Genomic

  1. NC_034177.2 Reference Okis_V2 Primary Assembly

    Range
    26714002..26715884 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020479805.2 → XP_020335394.1  ADP-ribosylation factor-like protein 2-binding protein isoform X1

    UniProtKB/TrEMBL
    A0A8C7C4R5
    Related
    ENSOKIP00005001463.1, ENSOKIT00005001553.1
    Conserved Domains (1) summary
    pfam11527
    Location:42 → 147
    ARL2_Bind_BART; The ARF-like 2 binding protein BART

  2. XM_020479806.2 → XP_020335395.1  ADP-ribosylation factor-like protein 2-binding protein isoform X2

    UniProtKB/TrEMBL
    A0A8C7C4R5
    Conserved Domains (1) summary
    pfam11527
    Location:44 → 148
    ARL2_Bind_BART; The ARF-like 2 binding protein BART
Nucleotide Protein
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