U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

cpne2 copine II [ Oncorhynchus kisutch (coho salmon) ]

Gene ID: 109889314, updated on 14-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
cpne2
Gene description
copine II
See related
Ensembl:ENSOKIG00005000863
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus kisutch
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Orthologs
human zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See cpne2 in Genome Data Viewer
Location:
chromosome: LG4
Exon count:
18
Annotation release Status Assembly LG Location
101 current Okis_V2 (GCF_002021735.2) LG4 NC_034177.2 (26746310..26783302, complement)
100 previous assembly Okis_V1 (GCF_002021735.1) LG4 NC_034177.1 (22686060..22722734, complement)

Linkage Group LG4 - NC_034177.2Genomic Context describing neighboring genes Neighboring gene ADP-ribosylation factor-like protein 2-binding protein Neighboring gene RING finger and SPRY domain-containing protein 1 Neighboring gene PSME3-interacting protein-like Neighboring gene protein NLRC5-like Neighboring gene uncharacterized LOC116373460

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Multi-tissue transcriptome profiles for coho salmon (Oncorhynchus kisutch), a species undergoing rediploidization following whole-genome duplication. Kim JH, et al. Mar Genomics, 2016 Feb. PMID 26614614
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium-dependent phospholipid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellular response to calcium ion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
copine-2

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Oncorhynchus kisutch Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Okis_V2 Primary Assembly

Genomic

  1. NC_034177.2 Reference Okis_V2 Primary Assembly

    Range
    26746310..26783302 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020480660.2 → XP_020336249.1  copine-2 isoform X2

    UniProtKB/TrEMBL
    A0A8C7C5Z3, A0A8C7CCB0
    Related
    ENSOKIP00005001974.1, ENSOKIT00005002088.1
    Conserved Domains (3) summary
    cd04047
    Location:153 → 265
    C2B_Copine; C2 domain second repeat in Copine
    cd04048
    Location:22 → 139
    C2A_Copine; C2 domain first repeat in Copine
    cd01459
    Location:277 → 528
    vWA_copine_like; VWA Copine: Copines are phospholipid-binding proteins originally identified in paramecium. They are found in human and orthologues have been found in C. elegans and Arabidopsis Thaliana. None have been found in D. Melanogaster or S. Cereviciae. ...

  2. XM_031822713.1 → XP_031678573.1  copine-2 isoform X1

    UniProtKB/TrEMBL
    A0A8C7C5Z3
    Conserved Domains (3) summary
    cd04047
    Location:177 → 289
    C2B_Copine; C2 domain second repeat in Copine
    cd04048
    Location:46 → 163
    C2A_Copine; C2 domain first repeat in Copine
    cd01459
    Location:301 → 552
    vWA_copine_like; VWA Copine: Copines are phospholipid-binding proteins originally identified in paramecium. They are found in human and orthologues have been found in C. elegans and Arabidopsis Thaliana. None have been found in D. Melanogaster or S. Cereviciae. ...

  3. XM_020480661.2 → XP_020336250.1  copine-2 isoform X2

    UniProtKB/TrEMBL
    A0A8C7C5Z3, A0A8C7CCB0
    Related
    ENSOKIP00005002018.1, ENSOKIT00005002131.1
    Conserved Domains (3) summary
    cd04047
    Location:153 → 265
    C2B_Copine; C2 domain second repeat in Copine
    cd04048
    Location:22 → 139
    C2A_Copine; C2 domain first repeat in Copine
    cd01459
    Location:277 → 528
    vWA_copine_like; VWA Copine: Copines are phospholipid-binding proteins originally identified in paramecium. They are found in human and orthologues have been found in C. elegans and Arabidopsis Thaliana. None have been found in D. Melanogaster or S. Cereviciae. ...
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.