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LOC110120964 VISTA enhancer hs1019 [ Homo sapiens (human) ]

Gene ID: 110120964, updated on 10-Dec-2024

Summary

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Gene symbol
LOC110120964
Gene description
VISTA enhancer hs1019
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
PROVISIONAL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This locus represents a conserved genomic element that can function as an enhancer. It can activate a Hsp68 promoter coupled to a LacZ reporter gene in transgenic mice. [provided by RefSeq, Jun 2015]
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Genomic context

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See LOC110120964 in Genome Data Viewer
Location:
chromosome: 7
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (20799224..20800776)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (20935276..20936828)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (20838843..20840395)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr7:20681108-20682307 Neighboring gene NANOG hESC enhancer GRCh37_chr7:20693236-20693793 Neighboring gene ATP binding cassette subfamily B member 5 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr7:20815756-20816338 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr7:20816339-20816919 Neighboring gene H3K27ac hESC enhancer GRCh37_chr7:20822883-20823543 Neighboring gene VISTA enhancer hs844 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr7:20835446-20836154 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17992 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17994 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17993 Neighboring gene NANOG hESC enhancer GRCh37_chr7:20855921-20856533 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr7:20866537-20867736 Neighboring gene Sp8 transcription factor Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:20874484-20874984 Neighboring gene long intergenic non-protein coding RNA 1162 Neighboring gene ribosomal protein L23 pseudogene 8 Neighboring gene ribosomal protein S26 pseudogene 30

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. VISTA Enhancer Browser--a database of tissue-specific human enhancers. Visel A, et al. Nucleic Acids Res, 2007 Jan. PMID 17130149, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_053585.1 

    Range
    101..1653
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

    Range
    20799224..20800776
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060931.1 Alternate T2T-CHM13v2.0

    Range
    20935276..20936828
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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