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PHYHD1 phytanoyl-CoA dioxygenase domain containing 1 [ Sus scrofa (pig) ]

Gene ID: 110255203, updated on 3-Dec-2024

Summary

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Official Symbol
PHYHD1provided by VGNC
Official Full Name
phytanoyl-CoA dioxygenase domain containing 1provided by VGNC
Primary source
VGNC:VGNC:107165
See related
Ensembl:ENSSSCG00000005665
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Broad expression in liver (RPKM 21.8), heart (RPKM 17.9) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See PHYHD1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
12
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 1 NC_010443.5 (269241955..269254708)

Chromosome 1 - NC_010443.5Genomic Context describing neighboring genes Neighboring gene kynurenine aminotransferase 1 Neighboring gene leucine rich repeat containing 8 VRAC subunit A Neighboring gene nucleoporin 188 Neighboring gene dolichol kinase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_010443.5 Chromosome 1 Reference Sscrofa11.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
phytanoyl-CoA dioxygenase domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010443.5 Reference Sscrofa11.1 Primary Assembly

    Range
    269241955..269254708
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013993922.2 → XP_013849376.1  phytanoyl-CoA dioxygenase domain-containing protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A4X1TPF1
    Conserved Domains (1) summary
    pfam05721
    Location:12 → 235
    PhyH; Phytanoyl-CoA dioxygenase (PhyH)

  2. XM_001928841.5 → XP_001928876.1  phytanoyl-CoA dioxygenase domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A4X1TPC5, A0A4X1TPF1, F1RR60
    Related
    ENSSSCP00000006069.2, ENSSSCT00000006228.5
    Conserved Domains (1) summary
    pfam05721
    Location:12 → 259
    PhyH; Phytanoyl-CoA dioxygenase (PhyH)
Nucleotide Protein
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