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LOC110506750 sodium-dependent noradrenaline transporter [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 110506750, updated on 14-Dec-2023

Summary

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Gene symbol
LOC110506750
Gene description
sodium-dependent noradrenaline transporter
See related
Ensembl:ENSOMYG00000021656
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC110506750 in Genome Data Viewer
Location:
chromosome: 26
Exon count:
15
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 26 NC_048590.1 (38126089..38222653, complement)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 26 NC_035102.1 (27881306..27935716, complement)

Chromosome 26 - NC_048590.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110506749 Neighboring gene matrix metalloproteinase-2 Neighboring gene lysophosphatidylcholine acyltransferase 2 Neighboring gene solute carrier family 12 member 4 Neighboring gene dipeptidase 2 Neighboring gene uncharacterized LOC118944403 Neighboring gene E3 ubiquitin-protein ligase AMFR

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables dopamine:sodium symporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables norepinephrine:sodium symporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in dopamine uptake involved in synaptic transmission IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in norepinephrine transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sodium ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in neuron projection IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in neuronal cell body membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in presynaptic membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sodium-dependent noradrenaline transporter

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_048590.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    38126089..38222653 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021586593.2 → XP_021442268.1  sodium-dependent noradrenaline transporter

    UniProtKB/TrEMBL
    A0A8C7RLY2, A0A8C7UKQ1
    Related
    ENSOMYP00000052645.1, ENSOMYT00000057257.2
    Conserved Domains (1) summary
    cl00456
    Location:64 → 624
    SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases