U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC111828549 josephin-like protein [ Capsella rubella ]

Gene ID: 111828549, updated on 21-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
LOC111828549
Gene description
josephin-like protein
Locus tag
CARUB_v10024771mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Capsella rubella
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC111828549 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
100 current Caprub1_0 (GCF_000375325.1) Unplaced Scaffold NW_006238920.1 (7244109..7247572)

NW_006238920.1Genomic Context describing neighboring genes Neighboring gene F-box/kelch-repeat protein At2g29830 Neighboring gene uncharacterized LOC17889847 Neighboring gene phosphomethylpyrimidine synthase, chloroplastic Neighboring gene josephin-like protein Neighboring gene sodium-dependent phosphate transport protein 1, chloroplastic Neighboring gene uncharacterized LOC111831088

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_006238920 Unplaced Scaffold Reference Caprub1_0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
josephin-like protein

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Capsella rubella Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Caprub1_0

Genomic

  1. NW_006238920.1 Reference Caprub1_0

    Range
    7244109..7247572
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023784266.1 → XP_023640034.1  josephin-like protein

  2. XM_023784265.1 → XP_023640033.1  josephin-like protein

  3. XM_023784268.1 → XP_023640036.1  josephin-like protein

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases