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LOC112042688 basement membrane-specific heparan sulfate proteoglycan core protein-like [ Lingula anatina ]

Gene ID: 112042688, updated on 21-Dec-2023

Summary

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Gene symbol
LOC112042688
Gene description
basement membrane-specific heparan sulfate proteoglycan core protein-like
See related
EnsemblRapid:LOC112042688
Gene type
protein coding
RefSeq status
MODEL
Organism
Lingula anatina
Lineage
Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Brachiopoda; Linguliformea; Lingulata; Lingulida; Linguloidea; Lingulidae; Lingula
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Genomic context

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See LOC112042688 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
34
Annotation release Status Assembly Chr Location
101 current LinAna2.0 (GCF_001039355.2) Unplaced Scaffold NW_019775762.1 (145819..219840, complement)

NW_019775762.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106180981 Neighboring gene basement membrane-specific heparan sulfate proteoglycan core protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019775762 Unplaced Scaffold Reference LinAna2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Lingula genome provides insights into brachiopod evolution and the origin of phosphate biomineralization. Luo YJ, et al. Nat Commun, 2015 Sep 18. PMID 26383154, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
basement membrane-specific heparan sulfate proteoglycan core protein-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Lingula anatina Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference LinAna2.0 Primary Assembly

Genomic

  1. NW_019775762.1 Reference LinAna2.0 Primary Assembly

    Range
    145819..219840 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024077643.1 → XP_023933411.1  basement membrane-specific heparan sulfate proteoglycan core protein-like

    UniProtKB/TrEMBL
    A0A2R2MT31
    Related
    XP_023933411.1, XM_024077643.1
    Conserved Domains (7) summary
    cd00055
    Location:1270 → 1312
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cd00112
    Location:826 → 860
    LDLa; Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about ...
    pfam07679
    Location:689 → 772
    I-set; Immunoglobulin I-set domain
    pfam00053
    Location:1378 → 1423
    Laminin_EGF; Laminin EGF domain
    pfam00052
    Location:1091 → 1234
    Laminin_B; Laminin B (Domain IV)
    pfam01390
    Location:109 → 195
    SEA; SEA domain
    cl11960
    Location:922 → 999
    Ig; Immunoglobulin domain
Nucleotide Protein
Heading Accession and Version

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