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NSMAF neutral sphingomyelinase activation associated factor [ Apteryx rowi (Okarito brown kiwi) ]

Gene ID: 112978659, updated on 15-Mar-2024

Summary

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Gene symbol
NSMAF
Gene description
neutral sphingomyelinase activation associated factor
See related
Ensembl:ENSARWG00000003495
Gene type
protein coding
RefSeq status
MODEL
Organism
Apteryx rowi
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Palaeognathae; Apterygiformes; Apterygidae; Apteryx
Orthologs
human mouse all
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Genomic context

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See NSMAF in Genome Data Viewer
Location:
chromosome: Un
Exon count:
31
Annotation release Status Assembly Chr Location
100 current aptRow1 (GCF_003343035.1) Unplaced Scaffold NW_020451271.1 (332450..368916, complement)

NW_020451271.1Genomic Context describing neighboring genes Neighboring gene cholesterol 7-alpha-monooxygenase Neighboring gene UBX domain protein 2B Neighboring gene syndecan binding protein Neighboring gene thymocyte selection associated high mobility group box Neighboring gene carbonic anhydrase 8

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020451271 Unplaced Scaffold Reference aptRow1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein FAN

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Apteryx rowi Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference aptRow1

Genomic

  1. NW_020451271.1 Reference aptRow1

    Range
    332450..368916 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026092303.1 → XP_025948088.1  protein FAN

    Conserved Domains (4) summary
    cd00200
    Location:584 → 876
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:637 → 674
    7WD40; WD40 repeat [structural motif]
    pfam02138
    Location:263 → 534
    Beach; Beige/BEACH domain
    cl17171
    Location:151 → 244
    PH-like; Pleckstrin homology-like domain

  2. XM_026092302.1 → XP_025948087.1  protein FAN

    Related
    ENSARWP00000005136.1, ENSARWT00000005900.1
    Conserved Domains (4) summary
    cd00200
    Location:584 → 876
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:637 → 674
    7WD40; WD40 repeat [structural motif]
    pfam02138
    Location:263 → 534
    Beach; Beige/BEACH domain
    cl17171
    Location:151 → 244
    PH-like; Pleckstrin homology-like domain

RNA

  1. XR_003257962.1 RNA Sequence

    Related
    ENSARWT00000005964.1
Nucleotide Protein
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