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traR transcriptional regulator TraR [ Agrobacterium fabrum str. C58 ]

Gene ID: 1137457, updated on 27-Aug-2024

Summary

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Gene symbol
traR
Gene description
transcriptional regulator TraR
Locus tag
ATU_RS23655
Gene type
protein coding
Organism
Agrobacterium fabrum str. C58 (strain: C58, culture-collection: ATCC:33970, type-material: type strain of Agrobacterium fabrum)
Lineage
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex
Old locus tag
AGR_pTi_249; Atu6134
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Genomic context

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Location:
plasmid: Ti
Sequence:
NC_003065.3 (152839..153543, complement)

NC_003065.3Genomic Context describing neighboring genes Neighboring gene PAS domain-containing methyl-accepting chemotaxis protein Neighboring gene hypothetical protein Neighboring gene sucrose phosphorylase Neighboring gene Na/Pi cotransporter family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003065.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Identification of amino acid residues of the pheromone-binding domain of the transcription factor TraR that are required for positive control. Costa ED, et al. Mol Microbiol, 2009 Aug. PMID 19602141, Free PMC Article
  2. Dimerization of the quorum-sensing transcription factor TraR enhances resistance to cytoplasmic proteolysis. Pinto UM, et al. Mol Microbiol, 2009 Jul. PMID 19432796, Free PMC Article
  3. TraR auto-inducer enhances protein backbone fluctuations in DNA binding domain. Vreede J, et al. FEBS Lett, 2008 Mar 5. PMID 18275856
  4. Conjugation factor of Agrobacterium tumefaciens regulates Ti plasmid transfer by autoinduction. Piper KR, et al. Nature, 1993 Apr 1. PMID 8464476
  5. The genome of the natural genetic engineer Agrobacterium tumefaciens C58. Wood DW, et al. Science, 2001 Dec 14. PMID 11743193

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. 15 mutations accumulate and bind to DNA but that fail to activate the class II promoter.
    Title: Identification of amino acid residues of the pheromone-binding domain of the transcription factor TraR that are required for positive control.
  2. Dimerization of TraR enhances resistance to cellular proteases.
    Title: Dimerization of the quorum-sensing transcription factor TraR enhances resistance to cytoplasmic proteolysis.
  3. These results imply 3-oxo-octanoyl-l-homoserine lactone in inducing fluctuations in TraR that may facilitate DNA binding.
    Title: TraR auto-inducer enhances protein backbone fluctuations in DNA binding domain.
Submit: New GeneRIF Correction

General protein information

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Preferred Names
transcriptional regulator TraR

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003065.3 Reference assembly

    Range
    152839..153543 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. WP_010974900.1 MULTISPECIES: transcriptional regulator TraR [Agrobacterium]

    See identical proteins and their annotated locations for WP_010974900.1

    UniProtKB/Swiss-Prot
    P54294
    UniProtKB/TrEMBL
    A0A2Z2PGE0, A0A2Z2PIR2, A0A2Z2PR01, A0A2Z2PRR7, A0AAF0KHB2
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P54294.1

Gene LinkOut

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Research Materials