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SMAD1 SMAD family member 1 [ Bos indicus x Bos taurus (hybrid cattle) ]

Gene ID: 113907815, updated on 15-Mar-2024

Summary

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Gene symbol
SMAD1
Gene description
SMAD family member 1
See related
Ensembl:ENSBIXG00005008639
Gene type
protein coding
RefSeq status
MODEL
Organism
Bos indicus x Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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See SMAD1 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
9
Annotation release Status Assembly Chr Location
100 current UOA_Brahman_1 (GCF_003369695.1) 17 NC_040092.1 (59877532..59959940)

Chromosome 17 - NC_040092.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC113907814 Neighboring gene OTU deubiquitinase 4 Neighboring gene 40S ribosomal protein S27-like Neighboring gene metabolism of cobalamin associated A Neighboring gene chromosome 17 C4orf51 homolog

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_040092.1 Chromosome 17 Reference UOA_Brahman_1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables I-SMAD binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in BMP signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in SMAD protein signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in anatomical structure morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transforming growth factor beta receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of heteromeric SMAD protein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
mothers against decapentaplegic homolog 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bos indicus x Bos taurus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UOA_Brahman_1

Genomic

  1. NC_040092.1 Reference UOA_Brahman_1

    Range
    59877532..59959940
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027567448.1 → XP_027423249.1  mothers against decapentaplegic homolog 1

    UniProtKB/TrEMBL
    A0A4W2DTT5, A0A4W2HD35
    Related
    ENSBIXP00005002254.1, ENSBIXT00005012601.1
    Conserved Domains (3) summary
    cd10490
    Location:9 → 132
    MH1_SMAD_1_5_9; N-terminal Mad Homology 1 (MH1) domain in SMAD1, SMAD5 and SMAD9 (also known as SMAD8)
    cd10497
    Location:265 → 465
    MH2_SMAD_1_5_9; C-terminal Mad Homology 2 (MH2) domain in SMAD1, SMAD5 and SMAD9
    PRK10263
    Location:133 → 244
    PRK10263; DNA translocase FtsK; Provisional

  2. XM_027567449.1 → XP_027423250.1  mothers against decapentaplegic homolog 1

    UniProtKB/TrEMBL
    A0A4W2DTT5, A0A4W2HD35
    Conserved Domains (3) summary
    cd10490
    Location:9 → 132
    MH1_SMAD_1_5_9; N-terminal Mad Homology 1 (MH1) domain in SMAD1, SMAD5 and SMAD9 (also known as SMAD8)
    cd10497
    Location:265 → 465
    MH2_SMAD_1_5_9; C-terminal Mad Homology 2 (MH2) domain in SMAD1, SMAD5 and SMAD9
    PRK10263
    Location:133 → 244
    PRK10263; DNA translocase FtsK; Provisional

  3. XM_027567450.1 → XP_027423251.1  mothers against decapentaplegic homolog 1

    UniProtKB/TrEMBL
    A0A4W2DTT5, A0A4W2HD35
    Conserved Domains (3) summary
    cd10490
    Location:9 → 132
    MH1_SMAD_1_5_9; N-terminal Mad Homology 1 (MH1) domain in SMAD1, SMAD5 and SMAD9 (also known as SMAD8)
    cd10497
    Location:265 → 465
    MH2_SMAD_1_5_9; C-terminal Mad Homology 2 (MH2) domain in SMAD1, SMAD5 and SMAD9
    PRK10263
    Location:133 → 244
    PRK10263; DNA translocase FtsK; Provisional
Nucleotide Protein
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