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LOC11414358 protein IWS1 homolog 1 [ Medicago truncatula (barrel medic) ]

Gene ID: 11414358, updated on 7-Dec-2023

Summary

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Gene symbol
LOC11414358
Gene description
protein IWS1 homolog 1
Locus tag
MtrunA17_Chr5g0410141
Gene type
protein coding
RefSeq status
MODEL
Organism
Medicago truncatula
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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Genomic context

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See LOC11414358 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
11
Annotation release Status Assembly Chr Location
102 current MtrunA17r5.0-ANR (GCF_003473485.1) 5 NC_053046.1 (11761444..11766269)
101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 5 NC_016411.2 (11713857..11718694)

Chromosome 5 - NC_053046.1Genomic Context describing neighboring genes Neighboring gene protein AE7 Neighboring gene UV-B-induced protein At3g17800, chloroplastic Neighboring gene putative disease resistance protein RGA3 Neighboring gene uncharacterized LOC112421976

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Dual RNA-Seq analysis of Medicago truncatula and the pea powdery mildew Erysiphe pisi uncovers distinct host transcriptional signatures during incompatible and compatible interactions and pathogen effector candidates. Gupta M, et al. Genomics, 2020 May. PMID 31837401
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in brassinosteroid mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription elongation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein IWS1 homolog 1
Names
putative transcription regulator IWS1 family
transcription elongation factor (TFIIS) family protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MtrunA17r5.0-ANR Primary Assembly

Genomic

  1. NC_053046.1 Reference MtrunA17r5.0-ANR Primary Assembly

    Range
    11761444..11766269
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003612661.4 → XP_003612709.1  protein IWS1 homolog 1

    See identical proteins and their annotated locations for XP_003612709.1

    UniProtKB/TrEMBL
    G7K9K8
    Conserved Domains (1) summary
    cl00146
    Location:188 → 469
    TFIIS_I; N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme
Nucleotide Protein
Heading Accession and Version

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