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LOC11445916 protein disulfide-isomerase 5-4 [ Medicago truncatula (barrel medic) ]

Gene ID: 11445916, updated on 7-Dec-2023

Summary

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Gene symbol
LOC11445916
Gene description
protein disulfide-isomerase 5-4
Locus tag
MtrunA17_Chr4g0041801
Gene type
protein coding
RefSeq status
MODEL
Organism
Medicago truncatula
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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Genomic context

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See LOC11445916 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
15
Annotation release Status Assembly Chr Location
102 current MtrunA17r5.0-ANR (GCF_003473485.1) 4 NC_053045.1 (39341871..39350964)
101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 4 NC_016410.2 (31384402..31393539)

Chromosome 4 - NC_053045.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC11444629 Neighboring gene electron transfer flavoprotein subunit alpha, mitochondrial Neighboring gene U11 spliceosomal RNA Neighboring gene early nodulin-like protein 1 Neighboring gene TBC1 domain family member 17

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Dual RNA-Seq analysis of Medicago truncatula and the pea powdery mildew Erysiphe pisi uncovers distinct host transcriptional signatures during incompatible and compatible interactions and pathogen effector candidates. Gupta M, et al. Genomics, 2020 May. PMID 31837401
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in COPII-coated ER to Golgi transport vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein disulfide-isomerase 5-4
Names
protein disulfide-isomerase 5-3
putative thioredoxin-like, endoplasmic reticulum vesicle transporter

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MtrunA17r5.0-ANR Primary Assembly

Genomic

  1. NC_053045.1 Reference MtrunA17r5.0-ANR Primary Assembly

    Range
    39341871..39350964
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003607605.4 → XP_003607653.1  protein disulfide-isomerase 5-4

    See identical proteins and their annotated locations for XP_003607653.1

    UniProtKB/TrEMBL
    G7JDV5, I3S8L8
    Conserved Domains (3) summary
    cd02961
    Location:144 → 258
    PDI_a_family; Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI ...
    pfam07970
    Location:290 → 458
    COPIIcoated_ERV; Endoplasmic reticulum vesicle transporter
    pfam13850
    Location:7 → 94
    ERGIC_N; Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC)
Nucleotide Protein
Heading Accession and Version

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