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Krtap5-5 keratin associated protein 5-5 [ Mus musculus (house mouse) ]

Gene ID: 114666, updated on 27-Nov-2024

Summary

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Official Symbol
Krtap5-5provided by MGI
Official Full Name
keratin associated protein 5-5provided by MGI
Primary source
MGI:MGI:2149673
See related
Ensembl:ENSMUSG00000073785 AllianceGenome:MGI:2149673
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
A030001H12Rik
Summary
Acts upstream of or within hematopoietic progenitor cell differentiation. Predicted to be located in intermediate filament. Orthologous to human KRTAP5-5 (keratin associated protein 5-5). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See Krtap5-5 in Genome Data Viewer
Location:
7 F5; 7 87.78 cM
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (141782532..141783708, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (142228795..142229971, complement)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene keratin associated protein 5-21 Neighboring gene STARR-seq mESC enhancer starr_20501 Neighboring gene potassium channel tetramerisation domain containing 18 pseudogene Neighboring gene STARR-seq mESC enhancer starr_20502 Neighboring gene keratin associated protein 5-24 Neighboring gene predicted gene, 46022 Neighboring gene keratin-associated protein 5-1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Molecular evolution of the keratin associated protein gene family in mammals, role in the evolution of mammalian hair. Wu DD, et al. BMC Evol Biol, 2008 Aug 23. PMID 18721477, Free PMC Article
  2. Haploinsufficiency of SAMD9L, an endosome fusion facilitator, causes myeloid malignancies in mice mimicking human diseases with monosomy 7. Nagamachi A, et al. Cancer Cell, 2013 Sep 9. PMID 24029230
  3. BGEM: an in situ hybridization database of gene expression in the embryonic and adult mouse nervous system. Magdaleno S, et al. PLoS Biol, 2006 Apr. PMID 16602821, Free PMC Article
  4. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  5. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

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Markers

Clone Names

  • MGC130543

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within hematopoietic progenitor cell differentiation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  
located_in intermediate filament IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
keratin-associated protein 5-5

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001037822.1 → NP_001032911.1  keratin-associated protein 5-5

    See identical proteins and their annotated locations for NP_001032911.1

    Status: PROVISIONAL

    Source sequence(s)
    BC111113
    Consensus CDS
    CCDS22026.1
    UniProtKB/Swiss-Prot
    Q2TA51
    Related
    ENSMUSP00000095555.3, ENSMUST00000097942.3

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    141782532..141783708 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q2TA51.1 GenPept UniProtKB/Swiss-Prot:Q2TA51

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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