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Ecym_3249 tRNA dihydrouridine synthase [ Eremothecium cymbalariae DBVPG#7215 ]

Gene ID: 11470971, updated on 6-Dec-2024

Summary

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Gene symbol
Ecym_3249
Gene description
tRNA dihydrouridine synthase
Locus tag
Ecym_3249
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Eremothecium cymbalariae DBVPG#7215 (strain: DBVPG#7215)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Eremothecium
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Genomic context

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See Ecym_3249 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
1
Sequence:
Chromosome: 3; NC_016451.1 (471522..472580, complement)

Chromosome 3 - NC_016451.1Genomic Context describing neighboring genes Neighboring gene Hypothetical protein Neighboring gene 60S ribosomal protein eL31 Neighboring gene E3 ubiquitin-protein ligase BRE1 Neighboring gene Hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_016451.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome evolution in the eremothecium clade of the Saccharomyces complex revealed by comparative genomics. Wendland J, et al. G3 (Bethesda), 2011 Dec. PMID 22384365, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables flavin adenine dinucleotide binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables tRNA dihydrouridine synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in tRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tRNA dihydrouridine synthase
XP_003645559.1
  • similar to Ashbya gossypii AER075W

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_016451.1 Reference assembly

    Range
    471522..472580 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003645511.1 → XP_003645559.1  tRNA dihydrouridine synthase Ecym_3249 [Eremothecium cymbalariae DBVPG#7215]

    See identical proteins and their annotated locations for XP_003645559.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    G8JRH3
    Conserved Domains (2) summary
    COG0042
    Location:29 → 337
    DusA; tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
    cd02801
    Location:40 → 268
    DUS_like_FMN; Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also ...
Nucleotide Protein
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