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LOC114827886 VISTA enhancer mm1642 [ Mus musculus (house mouse) ]

Gene ID: 114827886, updated on 9-Aug-2024

Summary

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Gene symbol
LOC114827886
Gene description
VISTA enhancer mm1642
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Rr1933
Summary
This locus represents a conserved genomic element that can function as an enhancer. It can activate a Hsp68 promoter coupled to a LacZ reporter gene in transgenic mice. [provided by RefSeq, Jun 2015]
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Genomic context

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See LOC114827886 in Genome Data Viewer
Location:
chromosome: 8
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (121074065..121075816)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (120347326..120349077)

Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene genetic suppressor element 1, coiled-coil protein Neighboring gene STARR-seq mESC enhancer starr_22881 Neighboring gene STARR-seq mESC enhancer starr_22882 Neighboring gene predicted gene, 32968 Neighboring gene predicted gene, 39264 Neighboring gene VISTA enhancer mm99 Neighboring gene STARR-seq mESC enhancer starr_22885 Neighboring gene CapStarr-seq enhancer MGSCv37_chr8:122936895-122937096 Neighboring gene VISTA enhancer mm1674 Neighboring gene CapStarr-seq enhancer MGSCv37_chr8:122997596-122997871 Neighboring gene STARR-positive B cell enhancer ABC_E1773 Neighboring gene CapStarr-seq enhancer MGSCv37_chr8:123021612-123021863 Neighboring gene predicted gene, 51556 Neighboring gene CapStarr-seq enhancer MGSCv37_chr8:123037840-123038041 Neighboring gene CapStarr-seq enhancer MGSCv37_chr8:123038181-123038364 Neighboring gene CapStarr-seq enhancer MGSCv37_chr8:123052195-123052396 Neighboring gene RIKEN cDNA 1700016A09 gene Neighboring gene STARR-positive B cell enhancer ABC_E9746

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. VISTA Enhancer Browser--a database of tissue-specific human enhancers. Visel A, et al. Nucleic Acids Res, 2007 Jan. PMID 17130149, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Other Names

  • regulatory region 1933

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_065242.1 

    Range
    101..1852
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000074.7 Reference GRCm39 C57BL/6J

    Range
    121074065..121075816
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version