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KCNMB2 potassium calcium-activated channel subfamily M regulatory beta subunit 2 [ Rhinatrema bivittatum (two-lined caecilian) ]

Gene ID: 115099246, updated on 17-Mar-2024

Summary

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Gene symbol
KCNMB2
Gene description
potassium calcium-activated channel subfamily M regulatory beta subunit 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Rhinatrema bivittatum
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Gymnophiona; Rhinatrematidae; Rhinatrema
Orthologs
human mouse all
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Genomic context

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See KCNMB2 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
8
Annotation release Status Assembly Chr Location
100 current aRhiBiv1.1 (GCF_901001135.1) 9 NC_042623.1 (242856656..243033997, complement)

Chromosome 9 - NC_042623.1Genomic Context describing neighboring genes Neighboring gene phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha Neighboring gene zinc finger matrin-type 3 Neighboring gene uncharacterized LOC115099349 Neighboring gene TBL1X/Y related 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042623.1 Chromosome 9 Reference aRhiBiv1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Multi-tissue transcriptomes of caecilian amphibians highlight incomplete knowledge of vertebrate gene families. Torres-Sánchez M, et al. DNA Res, 2019 Feb 1. PMID 30351380, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium-activated potassium channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables potassium channel regulator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in detection of calcium ion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in potassium ion transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of voltage-gated potassium channel complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calcium-activated potassium channel subunit beta-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Rhinatrema bivittatum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference aRhiBiv1.1 Primary Assembly

Genomic

  1. NC_042623.1 Reference aRhiBiv1.1 Primary Assembly

    Range
    242856656..243033997 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029616729.1 → XP_029472589.1  calcium-activated potassium channel subunit beta-2 isoform X3

  2. XM_029616728.1 → XP_029472588.1  calcium-activated potassium channel subunit beta-2 isoform X2

  3. XM_029616730.1 → XP_029472590.1  calcium-activated potassium channel subunit beta-2 isoform X3

    Conserved Domains (2) summary
    pfam09303
    Location:2 → 32
    KcnmB2_inactiv; KCNMB2, ball and chain domain
    pfam03185
    Location:38 → 229
    CaKB; Calcium-activated potassium channel, beta subunit

  4. XM_029616727.1 → XP_029472587.1  calcium-activated potassium channel subunit beta-2 isoform X1

    Conserved Domains (2) summary
    pfam09303
    Location:50 → 80
    KcnmB2_inactiv; KCNMB2, ball and chain domain
    pfam03185
    Location:86 → 277
    CaKB; Calcium-activated potassium channel, beta subunit
Nucleotide Protein
Heading Accession and Version

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