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TPHA0P00680 uncharacterized protein [ Tetrapisispora phaffii CBS 4417 ]

Gene ID: 11530768, updated on 6-Dec-2024

Summary

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Gene symbol
TPHA0P00680
Gene description
uncharacterized protein
Locus tag
TPHA_0P00680
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Tetrapisispora phaffii CBS 4417 (strain: type strain:CBS 4417)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Tetrapisispora
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Genomic context

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See TPHA0P00680 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
1
Sequence:
Chromosome: 16; NC_016535.1 (139640..141823)

Chromosome 16 - NC_016535.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene 40S ribosomal protein eS24

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_016535.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolutionary erosion of yeast sex chromosomes by mating-type switching accidents. Gordon JL, et al. Proc Natl Acad Sci U S A, 2011 Dec 13. PMID 22123960, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein
XP_003688660.1
  • similar to Saccharomyces cerevisiae UBP13 (YBL067C) and UBP9 (YER098W); ancestral locus Anc_7.390

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_016535.1 Reference assembly

    Range
    139640..141823
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003688612.1 → XP_003688660.1  uncharacterized protein TPHA_0P00680 [Tetrapisispora phaffii CBS 4417]

    See identical proteins and their annotated locations for XP_003688660.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    G8C248
    Conserved Domains (2) summary
    cl02553
    Location:381 → 651
    Peptidase_C19; Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly ...
    pfam00443
    Location:374 → 650
    UCH; Ubiquitin carboxyl-terminal hydrolase
Nucleotide Protein
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