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TPHA0G01220 exomer complex subunit [ Tetrapisispora phaffii CBS 4417 ]

Gene ID: 11535917, updated on 6-Dec-2024

Summary

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Gene symbol
TPHA0G01220
Gene description
exomer complex subunit
Locus tag
TPHA_0G01220
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Tetrapisispora phaffii CBS 4417 (strain: type strain:CBS 4417)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Tetrapisispora
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Genomic context

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See TPHA0G01220 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
1
Sequence:
Chromosome: 7; NC_016526.1 (248183..250429, complement)

Chromosome 7 - NC_016526.1Genomic Context describing neighboring genes Neighboring gene carbamoyl-phosphate synthase (glutamine-hydrolyzing) CPA1 Neighboring gene uncharacterized protein Neighboring gene chromatin modification protein Neighboring gene multiprotein-bridging factor 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_016526.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolutionary erosion of yeast sex chromosomes by mating-type switching accidents. Gordon JL, et al. Proc Natl Acad Sci U S A, 2011 Dec 13. PMID 22123960, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in Golgi to plasma membrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of exomer complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
exomer complex subunit
XP_003686393.1
  • similar to Saccharomyces cerevisiae BCH1 (YMR237W) and BUD7 (YOR299W); ancestral locus Anc_8.772

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_016526.1 Reference assembly

    Range
    248183..250429 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003686345.1 → XP_003686393.1  exomer complex subunit [Tetrapisispora phaffii CBS 4417]

    See identical proteins and their annotated locations for XP_003686393.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    G8BVN1
    Conserved Domains (2) summary
    sd00006
    Location:299 → 327
    TPR; TPR repeat [structural motif]
    pfam09295
    Location:88 → 506
    ChAPs; ChAPs (Chs5p-Arf1p-binding proteins)
Nucleotide Protein
Heading Accession and Version

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