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TPHA0G01250 RNA-DNA hybrid ribonuclease [ Tetrapisispora phaffii CBS 4417 ]

Gene ID: 11535937, updated on 6-Dec-2024

Summary

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Gene symbol
TPHA0G01250
Gene description
RNA-DNA hybrid ribonuclease
Locus tag
TPHA_0G01250
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Tetrapisispora phaffii CBS 4417 (strain: type strain:CBS 4417)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Tetrapisispora
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Genomic context

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See TPHA0G01250 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
1
Sequence:
Chromosome: 7; NC_016526.1 (252862..253998, complement)

Chromosome 7 - NC_016526.1Genomic Context describing neighboring genes Neighboring gene chromatin modification protein Neighboring gene multiprotein-bridging factor 1 Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_016526.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolutionary erosion of yeast sex chromosomes by mating-type switching accidents. Gordon JL, et al. Proc Natl Acad Sci U S A, 2011 Dec 13. PMID 22123960, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA-DNA hybrid ribonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables magnesium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA replication, removal of RNA primer IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
RNA-DNA hybrid ribonuclease
XP_003686396.1
  • similar to Saccharomyces cerevisiae RNH1 (YMR234W); ancestral locus Anc_8.766

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_016526.1 Reference assembly

    Range
    252862..253998 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003686348.1 → XP_003686396.1  RNA-DNA hybrid ribonuclease [Tetrapisispora phaffii CBS 4417]

    See identical proteins and their annotated locations for XP_003686396.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    G8BVN4
    Conserved Domains (3) summary
    COG3341
    Location:9 → 200
    Rnh1; RNase HI-related protein, contains viroplasmin and RNaseH domains [General function prediction only]
    cd09280
    Location:216 → 376
    RNase_HI_eukaryote_like; Eukaryotic RNase H is essential and is longer and more complex than their prokaryotic counterparts
    pfam01693
    Location:12 → 53
    Cauli_VI; Caulimovirus viroplasmin
Nucleotide Protein
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