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syne1a spectrin repeat containing, nuclear envelope 1a [ Sparus aurata (gilthead seabream) ]

Gene ID: 115573813, updated on 17-Mar-2024

Summary

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Gene symbol
syne1a
Gene description
spectrin repeat containing, nuclear envelope 1a
See related
Ensembl:ENSSAUG00010009912
Gene type
protein coding
RefSeq status
MODEL
Organism
Sparus aurata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Spariformes; Sparidae; Sparus
Orthologs
zebrafish all
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Genomic context

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See syne1a in Genome Data Viewer
Location:
chromosome: 22
Exon count:
149
Annotation release Status Assembly Chr Location
100 current fSpaAur1.1 (GCF_900880675.1) 22 NC_044208.1 (18212450..18342570)

Chromosome 22 - NC_044208.1Genomic Context describing neighboring genes Neighboring gene serine active site containing 1 Neighboring gene myc target 1a Neighboring gene estrogen receptor 1 Neighboring gene acidic residue methyltransferase 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_044208.1 Chromosome 22 Reference fSpaAur1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nesprin-1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sparus aurata Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSpaAur1.1 Primary Assembly

Genomic

  1. NC_044208.1 Reference fSpaAur1.1 Primary Assembly

    Range
    18212450..18342570
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030404807.1 → XP_030260667.1  nesprin-1-like isoform X4

    Conserved Domains (7) summary
    COG0419
    Location:5319 → 5819
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    COG1196
    Location:4150 → 4997
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    COG5069
    Location:24 → 288
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:7796 → 8011
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    TIGR02168
    Location:3586 → 4311
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    cl02488
    Location:3084 → 3293
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    pfam10541
    Location:8820 → 8852
    KASH; Nuclear envelope localization domain

  2. XM_030404806.1 → XP_030260666.1  nesprin-1-like isoform X3

    Conserved Domains (7) summary
    COG0419
    Location:5345 → 5845
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    COG1196
    Location:4176 → 5023
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    COG5069
    Location:50 → 314
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:7822 → 8037
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    TIGR02168
    Location:3612 → 4337
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    cl02488
    Location:3110 → 3319
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    pfam10541
    Location:8823 → 8855
    KASH; Nuclear envelope localization domain

  3. XM_030404809.1 → XP_030260669.1  nesprin-1-like isoform X6

    Related
    ENSSAUT00010024306.1
    Conserved Domains (6) summary
    COG0419
    Location:5345 → 5845
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    COG1196
    Location:4176 → 5023
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    COG5069
    Location:50 → 314
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:7822 → 8037
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    TIGR02168
    Location:3612 → 4337
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    cl02488
    Location:7605 → 7820
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...

  4. XM_030404808.1 → XP_030260668.1  nesprin-1-like isoform X5

    Conserved Domains (7) summary
    COG0419
    Location:5345 → 5845
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    COG1196
    Location:4176 → 5023
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    COG5069
    Location:50 → 314
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:7775 → 7990
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    TIGR02168
    Location:3612 → 4337
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    cl02488
    Location:7558 → 7773
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    pfam10541
    Location:8799 → 8831
    KASH; Nuclear envelope localization domain

  5. XM_030404804.1 → XP_030260664.1  nesprin-1-like isoform X2

    Conserved Domains (7) summary
    COG0419
    Location:5332 → 5832
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    COG1196
    Location:4163 → 5010
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    COG5069
    Location:50 → 351
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:7809 → 8024
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    TIGR02168
    Location:3599 → 4324
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    cl02488
    Location:3097 → 3306
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    pfam10541
    Location:8833 → 8865
    KASH; Nuclear envelope localization domain

  6. XM_030404803.1 → XP_030260663.1  nesprin-1-like isoform X1

    Conserved Domains (7) summary
    COG0419
    Location:5345 → 5845
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    COG1196
    Location:4176 → 5023
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    COG5069
    Location:50 → 314
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:7822 → 8037
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    TIGR02168
    Location:3612 → 4337
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    cl02488
    Location:3110 → 3319
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    pfam10541
    Location:8846 → 8878
    KASH; Nuclear envelope localization domain
Nucleotide Protein
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