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esr1 estrogen receptor 1 [ Sparus aurata (gilthead seabream) ]

Gene ID: 115573814, updated on 19-Jun-2024

Summary

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Gene symbol
esr1
Gene description
estrogen receptor 1
See related
Ensembl:ENSSAUG00010010150
Gene type
protein coding
RefSeq status
MODEL
Organism
Sparus aurata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Spariformes; Sparidae; Sparus
Also known as
ER; esr; nr3a1; ER-alpha
Orthologs
zebrafish all
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Genomic context

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See esr1 in Genome Data Viewer
Location:
chromosome: 22
Exon count:
10
Annotation release Status Assembly Chr Location
100 current fSpaAur1.1 (GCF_900880675.1) 22 NC_044208.1 (18342637..18356656, complement)

Chromosome 22 - NC_044208.1Genomic Context describing neighboring genes Neighboring gene myc target 1a Neighboring gene spectrin repeat containing, nuclear envelope 1a Neighboring gene acidic residue methyltransferase 1 Neighboring gene zinc finger and BTB domain containing 2b

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_044208.1 Chromosome 22 Reference fSpaAur1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Structure, tissue distribution and estrogen regulation of splice variants of the sea bream estrogen receptor α gene. Pinto PI, et al. Gene, 2012 Jul 15. PMID 22579469
  2. Cloning and sequencing of the gilthead sea bream estrogen receptor cDNA. Muñoz-Cueto JA, et al. DNA Seq, 1999. PMID 10376207
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nuclear estrogen receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables steroid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in steroid hormone receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: estrogen receptor-like
Names
Estradiol receptor
Nuclear receptor subfamily 3 group A member 1
estrogen receptor alpha A22
estrogen receptor alpha A43
estrogen receptor alpha Delta E2,3'
estrogen receptor type alpha

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sparus aurata Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSpaAur1.1 Primary Assembly

Genomic

  1. NC_044208.1 Reference fSpaAur1.1 Primary Assembly

    Range
    18342637..18356656 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030404810.1 → XP_030260670.1  LOW QUALITY PROTEIN: estrogen receptor-like

    UniProtKB/TrEMBL
    A0A671VQI3
    Related
    ENSSAUP00010026821.1, ENSSAUT00010028314.1
    Conserved Domains (3) summary
    cd07171
    Location:188 → 267
    NR_DBD_ER; DNA-binding domain of estrogen receptors (ER) is composed of two C4-type zinc fingers
    pfam02159
    Location:49 → 189
    Oest_recep; Oestrogen receptor
    cl11397
    Location:320 → 557
    NR_LBD; The ligand binding domain of nuclear receptors, a family of ligand-activated transcription regulators
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9PVZ9.2 GenPept UniProtKB/Swiss-Prot:Q9PVZ9

Gene LinkOut

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