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zbtb2b zinc finger and BTB domain containing 2b [ Sparus aurata (gilthead seabream) ]

Gene ID: 115573815, updated on 12-Sep-2024

Summary

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Gene symbol
zbtb2b
Gene description
zinc finger and BTB domain containing 2b
See related
Ensembl:ENSSAUG00010011724
Gene type
protein coding
RefSeq status
MODEL
Organism
Sparus aurata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Spariformes; Sparidae; Sparus
Also known as
zbtb2
Orthologs
human zebrafish all
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Genomic context

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See zbtb2b in Genome Data Viewer
Location:
chromosome: 22
Exon count:
3
Annotation release Status Assembly Chr Location
100 current fSpaAur1.1 (GCF_900880675.1) 22 NC_044208.1 (18366665..18375202)

Chromosome 22 - NC_044208.1Genomic Context describing neighboring genes Neighboring gene estrogen receptor 1 Neighboring gene acidic residue methyltransferase 1 Neighboring gene A kinase (PRKA) anchor protein 12b Neighboring gene methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_044208.1 Chromosome 22 Reference fSpaAur1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger and BTB domain-containing protein 2
Names
zinc finger and BTB domain containing 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sparus aurata Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSpaAur1.1 Primary Assembly

Genomic

  1. NC_044208.1 Reference fSpaAur1.1 Primary Assembly

    Range
    18366665..18375202
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030404811.1 → XP_030260671.1  zinc finger and BTB domain-containing protein 2

    UniProtKB/TrEMBL
    A0A671VKT1
    Related
    ENSSAUP00010027110.1, ENSSAUT00010028607.1
    Conserved Domains (4) summary
    sd00017
    Location:375 → 395
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:373 → 395
    zf-C2H2; Zinc finger, C2H2 type
    cl38908
    Location:3 → 112
    BTB_POZ; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain superfamily
    pfam13465
    Location:387 → 409
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
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